Program
NEW (28/8/2016)!!!
Program_13th International School of Biophysics
Poster panels: 120x90cm, portrait
Short-talks (8+2 minutes) by students:
|
1.9.2016 |
Protein machines |
| Shiran |
Barber Zucker |
Hypermanganesemia as a Result of a Cation Diffusion Facilitator Cytoplasmic Domain Loss of Structure |
| Jelena |
Dragojević |
Functional characterization of organic anion transporters in zebrafish (Danio rerio): Oat2a-d |
| Franziska |
Heydenreich |
A GPCR as a Michalis-Menten enzyme: Understanding biased signalling of vasopressin V2 receptor |
| Faezeh |
Mofidi Najjar |
Mechanistic study on catalase activation by curcumin |
| Stephan |
Rempel |
The new vitamin B12 degradation product transporter BtuM |
| Tomas |
Šneideris |
Looking for a generic inhibitor of amyloid-like fibril formation among flavone derivatives |
| Olga |
Tkachenko |
Chaperone Mechanism of αB-Crysrallin |
| Oleksii |
Zdorevskyi |
Understanding the mechanism of DNA deactivation in ion therapy of cancer cells: hydrogen peroxide action |
|
2.9.2016 |
MS, EPR, X-ray, NMR |
| Miranda |
Collier |
Dynamic small heat-shock protein interactions with non-aggregating clients |
| Christoph |
Gmeiner |
Pulse EPR with Gd(III)-spin labels to determine distance distributions in a large protein/RNA complex |
| Daniel |
Mayer |
The structural basis for recognition of the „Phosphorylation Barcode“ of G protein-coupled receptors by arrestin |
| Anna |
Mullen |
Understanding structures & functional dynamics of membrane proteins using EPR spectroscopy |
| Marija |
Nišavić |
Positive/negative ion mode nano-electrospray ionization mass spectrometry of metallated peptides |
| Agnieszka |
Sztyler |
Analysis of intrinsically disordered region of human topoisomerase I using hydrogen/deuterium exchange mass spectrometry |
| Lara |
Štajner |
Investigation of selected amino acids influence on calcium carbonate precipitation as simple models of organic matrix |
|
4.9.2016 |
MD/simulations/models |
| Andrea |
Cesari |
Using the maximum entropy principle to enforce NMR data on RNA simulations |
| Yossa Dwi |
Hartono |
Investigation of tautomerisation and protonation equilibria of nucleic acid with lambda dynamics |
| Willem |
Jespers |
Binding mode prediction using free energy perturbations |
| Jakub |
Kollár |
Computational design of selective histone deacetylase inhibitors as epigenetic agents targeting cancer |
| Negar |
Nahali |
Density effects in entangled solutions of ring polymers |
|
5.9.2016 |
Lipid Membrane/ Membrane proteins |
| Barbara |
Eicher |
Joint analysis of SAXS and SANS data of asymmetric lipid vesicles |
| Dietmar |
Hammerschmid |
Characterization of the globin coupled sensor from Geobacter sulfurreducens using native mass spectrometry |
| Steven |
Lavington |
Exploring NTS1 helix 8 conformation and dynamics in lipid environments |
| Aliaksandra |
Skarabahatava |
In vitro and in vivo changes in lipids erythrocyte membrane affected aluminum ions |
| Lilit |
Tonoyan |
The Influence of Sodium Dodecyl Sulfate on Stability of Bilayer Lipid Membranes |
| Maria |
Tsemperoulli |
Optical and Electrical Characterization of Voltage Sensitive Dyes in Lipid Bilayers |
|
6.9.2016 |
Optics & imaging based approaches |
| Alexandra |
Falamas |
Raman microspectroscopy of stem cells: approach to monitor the CBCT radiation effect |
| Barbora |
Kalouskova |
Preparation and Structural Characterization of Human NK Cell Activating Immunocomplex NKp80:ACIL |
| Ana |
Milas |
Sliding of microtubules in the bridging fiber segregates chromosomes by creating poleward flux of the attached k-fibers |
| Rita |
Nagypál |
Fluorescence kinetics of flavin adenine dinucleotide in different microenvironments |
| Aiswaria |
Prakash |
Position dependent fluorescent properties of coupled fluorescent dyes in RNAs and proteins |
| Ioana Maria |
Simon |
Study of the biological effects of oral diagnostic irradiation with Raman spectroscopy |
| Dora |
Sviben |
Stability of proteins and viruses determined by differential scanning fluorimetry |
|
8.9.2016 |
Nanobio/soft matter physics |
| Jiandong |
Feng |
Coulomb blockade in ion transport |
| Sanjin |
Marion |
Nucleic acids and condensing proteins in viral confinement |
| Martina |
Požar |
The microscopic structure of hot and cold alcohol mixtures |
| Biljana |
Stojković |
Micro and macro-rheology study of DNA-levan mixtures |
| Pradeep |
Waduge |
Angstrom-Sensitivity Protein Sizing and Conformation Detection using Solid-State Nanopores |
Lecturers
- Nenad Ban, ETH, Zürich, Switzerland: Protein structure& function; X-ray diffraction
- Ribosomes and their functional complexes
- Beyond the prokaryotic ribosome
- Eurico Cabrita, Universidade Nova de Lisboa, Portugal
- Molecular Recognition, Intermolecular and Protein ligand interactions, NMR
- Mario Cindrić, Ruđer Bošković Institute
- Mass Spectrometry for protein sequencing
- Edwin De Pauw, Uni Liége, Belgium
- Mass spectrometry of nucleic acids structures and complexes
- Helena Danielson, Beactica AB, Uppsala, Sweden
- Zvonimir Dogić, Brandeis, USA
- Complex fluids, self-assembly
- Marija Drndić, University of Pennsylvania, USA: Experimental nano/biophysics
- biomolecular analysis with nanopores
- Peter Kolb, Philipps-Universität Marburg, Germany
- Chemoinformatics, docking to GPCRs
- Sabrina Leslie, McGill University, Montreal, Canada
- Fraser MacMillan, University of East Anglia, UK
- Chris Oostenbrink, UNRLF, Vienna, Austria: Structure and dynamics of biomolecules; modeling
- Ensembles and sampling, leading to molecular dynamics simulations
- Structure refinement using molecular dynamics simulations (NMR observables)
- Calculation of free energies from molecular simulation
- Arwen Pearson, Uni Hamburg, Germany: time-resolved X-ray and SAXS
- data collection methodologies, library of photocaging chemistries
- complementary solution phase experiments, THz time-domain spectroscopy
- Ana-Sunčana Smith, Ruđer Bošković Institute & Uni Erlangen-Nürnberg Germany: Membranes and vesicles, cell adhesion
- Membranes, from self assembly to rafts 1,2,3
- Frank Sobott, Uni Antwerpen, Belgium
- “native” mass spectrometry, ion mobility: structural proteomics techniques
- Holger Stark, MPI-BPC, Göttingen, Germany: Protein structure& function; cryoEM
- Introduction into single particle cryo-EM
- High-resolution structure determination of macromolecular complexes by cryo-EM
- Antonio Šiber, Institute of physics, Zagreb, Croatia: Physics of viruses
- Physics of viruses: electrostatics, elasticity and DNA condensation in viruses 1,2,3
- Iva Tolić, Ruđer Bošković Institute, Zagreb: Physics of cells
- Forces in the mitotic spindle
- Live-cell fluorescence microscopy and laser-cutting inside the cell
- Nuška Tschammer, Nanotemper, Germany
- GPCR protein-ligand recognition
- Dmitry Veprintsev, PSI, Villigen, Switzerland: Protein structure&function; X-rays & NMR
- Conformational states and ligand-induced changes in GPCRs
- Meni Wanunu, Northeastern Uni, USA
- Nanoscale biophysics, nanopores
- Anthony Watts, Department of Biochemistry, Oxford, UK: Protein structure& function; solid state NMR
- Principles of solid state NMR for the study of biomolecules
- Solid state NMR for structural studies of large integral membrane proteins
- Receptor dynamics and structure in membranes resolved using solid state NMR
- Bojan Žagrović, MFPL, Vienna, Austria: Computational Biophysics of Macromolecules
- More dynamic than we think? On conformational averaging in structural biology 1, 2
- Protein-RNA interactions and the origin of the genetic code
Programme & organization Committee
- Tomislav Vuletić, Institute of physics, Zagreb, Croatia (chair)
- Fraser MacMillan, CM1306 COST Action Coordinator, University of East Anglia, UK
- Peter Kolb, CM1207 COST Action Coordinator, Uni Marburg, Germany
- Frank Sobott, BM1403 COST Action Coordinator, Uni Antwerpen, Belgium
- Sanja Josef Golubić, University of Zagreb, Croatia
- Nadica Maltar-Strmečki, Ruđer Bošković Institute, Zagreb, Croatia
- Ida Delač Marion, Institute of Physics, Zagreb, Croatia
- Sanjin Marion, Institute of Physics, Zagreb, Croatia
